<?xml version="1.0" encoding="ISO-8859-1"?>
<GelML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
		xsi:schemaLocation="http://www.psidev.info/gelml/GelML-v1_1.xsd"
		xmlns:fuge="http://fuge.sourceforge.net/fuge/1.0"
		xmlns="http://www.psidev.info/gelml/1.0"
		identifier="ExPASy:GelML:302">

<cvList>
<cv fullName="PSI sepCV" URI="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/sepcv/trunk/sep.obo" id="sepCV" version="1.0"/>
<cv fullName="Unit Ontology" URI="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/sepcv/trunk/unit.obo" id="UO" version="1.2"/>
</cvList>


 
		
<Gel2DExperiment id="ex134:Gel2DExperiment302"
	name="Proteome reference map for Xanthomonas oryzae pv. oryzae ZJ173 (pH 4-7)" date="2011-12-10">
	<electrophoresisType>
		<cvParam cvRef="sepCV" accession="sep:00155" name="Two-Dimensional electrophoresis"/>
	</electrophoresisType>
	<ContactRole Contact_ref="ex134:Contact56">
        <role>
		<cvParam cvRef="sepCV" accession="sep:00035" name="principle investigator"/>
		</role>
	</ContactRole>








   



   

	
<Gel2DApplication Gel2DProtocol_ref="ex134:Gel2DProtocol302" id="ex134:Gel2DAppli302">


	
	
	<inputFirstDimension>
		


<Gel id="ex134:Gel1" name="Isoelectric focusing (IEF)" separationDimension="1">
	<gelType>IPG strip,Denaturing</gelType>
	
	<GelManufactureApplication>
		
		<make name="BioRad"/>
		<model name="IPG strip 17 cm; pH 4-7">
			<userParam name="Model number" value="163-2008"/>
		</model>
		<userParam name="Batch number" value="unknown"/>
		
	</GelManufactureApplication>
	<Dimensions>
		
		
		<x value="17.8" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
		<y value="0.33" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
		<z value="0.05" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
	</Dimensions>
	
	<percentAcrylamide>
		<AtomicValue><PropertyValue value="4"/></AtomicValue>
	</percentAcrylamide>
	<AcrylamideToCrossLinker acrylamide="32.3" crossLinker="1">
		<crossLinkerType>
			<cvParam cvRef="sepCV" accession="sep:00190" name="Bisacrylamide"/>
		</crossLinkerType>
	</AcrylamideToCrossLinker>	
</Gel>

	</inputFirstDimension>
	
   
	
	
	
	<inputSecondDimension>
		


<Gel id="ex134:Gel2" name="Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE)" separationDimension="2">
	<gelType>slab gel,Denaturing</gelType>
	
	<GelManufactureApplication>
	
		<protocolText>
		For each independent experiment, six gels were manufactured using the following receipe:
161.2 ml Milli-Q water, 124.8 ml 30 % acrylamide/Bis solution, 98.8 ml buffer (1.5 M Tris-HCl pH 8.8, 4% SDS), 5.8 ml 10% APS solution, 260 µl TEMED
		</protocolText>
		
	</GelManufactureApplication>
	<Dimensions>
		
		
		<x value="24" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
		<y value="18" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
		<z value="0.1" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
	</Dimensions>
	
	<percentAcrylamide>
		<AtomicValue><PropertyValue value="10"/></AtomicValue>
	</percentAcrylamide>
	<AcrylamideToCrossLinker acrylamide="37.5" crossLinker="1">
		<crossLinkerType>
			<cvParam cvRef="sepCV" accession="sep:00190" name="Bisacrylamide"/>
		</crossLinkerType>
	</AcrylamideToCrossLinker>	
</Gel>

	</inputSecondDimension>
	
   

<output>
<Gel2D id="ex134:Gel2D302">

    
	
	
    
	<PHRange dimension="1">
		<Range>
			<lowerLimit><PropertyValue value="150"/></lowerLimit>
			<upperLimit><PropertyValue value="20"/></upperLimit>
		</Range>
		<rangeType><cvParam cvRef="sepCV" accession="" name=""/></rangeType>
	</PHRange>
	

    
	
	
    
	
	<MolWeightRange dimension="2">
        <Range>
            <lowerLimit><PropertyValue value="" unitName="kilodaltons" unitCvRef="UO" unitAccession="UO:0000222"/></lowerLimit>
            <upperLimit><PropertyValue value="7" unitName="kilodaltons" unitCvRef="UO" unitAccession="UO:0000222"/></upperLimit>
        </Range>
		<rangeType><cvParam cvRef="sepCV" accession="sep:00019" name="logarithmic distribution"/></rangeType>
	</MolWeightRange>
	

</Gel2D>
</output>
<ChildProtocolApplications>
<!-- TO BE DONE -->

</ChildProtocolApplications>
</Gel2DApplication>

	

<ImageAcquisitionApplication Image_ref="ex134:Image130" Material_ref="ex134:Gel2D302" ImageAcquisitionProtocol_ref="ex134:ImageAcquisitionProtocol47" id="ex134:ImageAcquisitionApplication171">
	
	<protocolText>'gel' and 'Coomassie Blue' were chosen, and image acquisition was conducted after preview scan.</protocolText>
	
</ImageAcquisitionApplication>



	
</Gel2DExperiment>






	
		
		
	
<GelMLDataCollection>
<Image location="http://miapegeldb.expasy.org/download/456/1Mee1nan/" id="ex134:Image130" name="4-7" bitDepth="8-bit (256 colors)" dimensionX="2205" dimensionY="2223">
<resolution>
<AtomicValue>
    
        
    
	<PropertyValue value="400" unitAccession="UO:0000240" unitName="dots per inch" unitCvRef="UO"/>
</AtomicValue>
</resolution>
<fileFormat>
	
		
	
	<cvParam cvRef="sepCV" accession="sep:00053" name="TIFF"/>
</fileFormat>
<userParam name="Standard image orientation" value="Yes"/>
</Image>
</GelMLDataCollection>




















<GelMLProtocolCollection>

    <ElectrophoresisProtocol
name="FirstDimension"
id="ex134:ElectrophoresisProtocol358" >
<protocolText>[Protocol text in here]</protocolText>
<AddBufferAction id="ex134:AddBufferAction" SubstanceMixtureProtocol_ref="ex134:SubstanceMixtureProtocol0"/>
</ElectrophoresisProtocol>

    <ElectrophoresisProtocol
name="SecondDimension"
id="ex134:ElectrophoresisProtocol359" >
<protocolText>[Protocol text in here]</protocolText>
<AddBufferAction id="ex134:AddBufferAction" SubstanceMixtureProtocol_ref="ex134:SubstanceMixtureProtocol0"/>
</ElectrophoresisProtocol>

    
<ImageAcquisitionProtocol id="ex134:ImageAcquisitionProtocol47">
	<equipment id="ex134:GenericEquipment53" name="GS-800 scanner">
		<userParam name="type of equipment" value="Calibrated Densitometer" cvRef="sepCV" accession="sep:00096" />
		<userParam name="make" value="BioRad"/>
		
		<userParam name="version" value="170-7981"/>
		
	</equipment>
	<software id="ex134:GenericSoftware150" name="Quantity One" version="4.62"/>
	<AutoCalibration id="ex134:AutoCalib0">
		<BooleanValue value="false"/>
	</AutoCalibration>
	
	
</ImageAcquisitionProtocol>


</GelMLProtocolCollection>

<AuditCollection>

	<Person
id="ex134:Contact56"
name="Shu Xu"
email="2009202039@njau.edu.cn"
address="College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China">
<affiliations
Organization_ref="ex134:Organization15"/>
</Person>

	<affiliations
Organization_ref="ex134:Organization15"
name="experimenter"/>

</AuditCollection>
</GelML>



