<?xml version="1.0" encoding="ISO-8859-1"?>
<GelML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
		xsi:schemaLocation="http://www.psidev.info/gelml/GelML-v1_1.xsd"
		xmlns:fuge="http://fuge.sourceforge.net/fuge/1.0"
		xmlns="http://www.psidev.info/gelml/1.0"
		identifier="ExPASy:GelML:239">

<cvList>
<cv fullName="PSI sepCV" URI="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/sepcv/trunk/sep.obo" id="sepCV" version="1.0"/>
<cv fullName="Unit Ontology" URI="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/sepcv/trunk/unit.obo" id="UO" version="1.2"/>
</cvList>


 
		
<Gel2DExperiment id="ex104:Gel2DExperiment239"
	name="Protochlamydia amoebophila UWE25 elementary body reference proteome map" date="2005-10-01">
	<electrophoresisType>
		<cvParam cvRef="sepCV" accession="sep:00155" name="Two-Dimensional electrophoresis"/>
	</electrophoresisType>
	<ContactRole Contact_ref="ex104:Contact44">
        <role>
		<cvParam cvRef="sepCV" accession="sep:00035" name="principle investigator"/>
		</role>
	</ContactRole>








   



   

	
<Gel2DApplication Gel2DProtocol_ref="ex104:Gel2DProtocol239" id="ex104:Gel2DAppli239">


	
	
	<inputFirstDimension>
		


<Gel id="ex104:Gel1" name="Isoelectric focusing (IEF)" separationDimension="1">
	<gelType>IPG strip,Denaturing</gelType>
	
	<GelManufactureApplication>
		
		<make name="GE Healthcare Bio-Sciences Corp"/>
		<model name="ImmobilineTM DryStrip pH 3-10 Non-linear 24 cm strips ">
			<userParam name="Model number" value="17-6002-45 "/>
		</model>
		<userParam name="Batch number" value="unknown"/>
		
	</GelManufactureApplication>
	<Dimensions>
		
		
		<x value="240" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
		<y value="3" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
		<z value="0.5" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
	</Dimensions>
	
	<percentAcrylamide>
		<AtomicValue><PropertyValue value="4"/></AtomicValue>
	</percentAcrylamide>
	<AcrylamideToCrossLinker acrylamide="32" crossLinker="1">
		<crossLinkerType>
			<cvParam cvRef="sepCV" accession="sep:00190" name="Bisacrylamide"/>
		</crossLinkerType>
	</AcrylamideToCrossLinker>	
</Gel>

	</inputFirstDimension>
	
   
	
	
	
	<inputSecondDimension>
		


<Gel id="ex104:Gel2" name="Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE)" separationDimension="2">
	<gelType>slab gel,Denaturing</gelType>
	
	<GelManufactureApplication>
	
		<protocolText>
		amount for six gels: 30 % (w/v) Acrylamide/Bisacrylamide (188 ml), 1.5 M Tris-Cl pH 8.8 (113 ml), Double distilled water (140 ml), 10% (w/v) SDS (4.5 ml), 10% (w/v) ammonium persulfate (4.5 ml), 10% (w/v) TEMED (620 µl) 
		</protocolText>
		
	</GelManufactureApplication>
	<Dimensions>
		
		
		<x value="240" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
		<y value="205" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
		<z value="1.5" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
	</Dimensions>
	
	<percentAcrylamide>
		<AtomicValue><PropertyValue value="12.5"/></AtomicValue>
	</percentAcrylamide>
	<AcrylamideToCrossLinker acrylamide="37.5" crossLinker="1">
		<crossLinkerType>
			<cvParam cvRef="sepCV" accession="sep:00190" name="Bisacrylamide"/>
		</crossLinkerType>
	</AcrylamideToCrossLinker>	
</Gel>

	</inputSecondDimension>
	
   

<output>
<Gel2D id="ex104:Gel2D239">

    
	
	
    
	<PHRange dimension="1">
		<Range>
			<lowerLimit><PropertyValue value="10"/></lowerLimit>
			<upperLimit><PropertyValue value="120"/></upperLimit>
		</Range>
		<rangeType><cvParam cvRef="sepCV" accession="" name=""/></rangeType>
	</PHRange>
	

    
	
	
    
	
	<MolWeightRange dimension="2">
        <Range>
            <lowerLimit><PropertyValue value="" unitName="kilodaltons" unitCvRef="UO" unitAccession="UO:0000222"/></lowerLimit>
            <upperLimit><PropertyValue value="7" unitName="kilodaltons" unitCvRef="UO" unitAccession="UO:0000222"/></upperLimit>
        </Range>
		<rangeType><cvParam cvRef="sepCV" accession="sep:00019" name="logarithmic distribution"/></rangeType>
	</MolWeightRange>
	

</Gel2D>
</output>
<ChildProtocolApplications>
<!-- TO BE DONE -->

</ChildProtocolApplications>
</Gel2DApplication>

	

<ImageAcquisitionApplication Image_ref="ex104:Image96" Material_ref="ex104:Gel2D239" ImageAcquisitionProtocol_ref="ex104:ImageAcquisitionProtocol29" id="ex104:ImageAcquisitionApplication128">
	
	<protocolText>The gel image was acquired in 16 bit grayscale with a resolution of 300 dpi and was saved in tif format. No filters or image processing tools were used during aquisition. A Kodak Step Tablet no. 2 (GE Healthcare Bio-Sciences Corp.) was scanned using the same parameters.
An intensity calibration was performed within the image analysis software Image Master 2D Platinum (GE Healthcare Bio-Sciences Corp.) as described in the manual of the software.
</protocolText>
	
</ImageAcquisitionApplication>



	
</Gel2DExperiment>






	
		
		
	
<GelMLDataCollection>
<Image location="http://miapegeldb.expasy.org/download/318/veNnKjKh/" id="ex104:Image96" name="Pam EB gel" bitDepth="24-bit (TrueColor)" dimensionX="768" dimensionY="1040">
<resolution>
<AtomicValue>
    
        
    
	<PropertyValue value="72" unitAccession="UO:0000240" unitName="dots per inch" unitCvRef="UO"/>
</AtomicValue>
</resolution>
<fileFormat>
	
		
	
	<cvParam cvRef="sepCV" accession="sep:00053" name="TIFF"/>
</fileFormat>
<userParam name="Standard image orientation" value="Yes"/>
</Image>
</GelMLDataCollection>




















<GelMLProtocolCollection>

    <ElectrophoresisProtocol
name="FirstDimension"
id="ex104:ElectrophoresisProtocol272" >
<protocolText>[Protocol text in here]</protocolText>
<AddBufferAction id="ex104:AddBufferAction" SubstanceMixtureProtocol_ref="ex104:SubstanceMixtureProtocol0"/>
</ElectrophoresisProtocol>

    <ElectrophoresisProtocol
name="SecondDimension"
id="ex104:ElectrophoresisProtocol273" >
<protocolText>[Protocol text in here]</protocolText>
<AddBufferAction id="ex104:AddBufferAction" SubstanceMixtureProtocol_ref="ex104:SubstanceMixtureProtocol0"/>
</ElectrophoresisProtocol>

    
<ImageAcquisitionProtocol id="ex104:ImageAcquisitionProtocol29">
	<equipment id="ex104:GenericEquipment44" name="Epson Expression 1680 Pro">
		<userParam name="type of equipment" value="flatbed color scanner" cvRef="sepCV" accession="sep:00096" />
		<userParam name="make" value="Seiko Epson Corp."/>
		
	</equipment>
	<software id="ex104:GenericSoftware114" name="SilverFast® Ai 6 " version="Photoshop Version"/>
	<AutoCalibration id="ex104:AutoCalib0">
		<BooleanValue value="false"/>
	</AutoCalibration>
	
	
</ImageAcquisitionProtocol>


</GelMLProtocolCollection>

<AuditCollection>

	<Person
id="ex104:Contact44"
name="Matthias Horn"
email="horn@microbial-ecology.net"
address="University of Vienna 
Department of Microbial Ecology
Althanstrasse 14 
1090 Vienna
Austria
">
<affiliations
Organization_ref="ex104:Organization35"/>
</Person>

	<affiliations
Organization_ref="ex104:Organization35"
name="University of Vienna, Department of Microbial Ecology"/>

</AuditCollection>
</GelML>



