<?xml version="1.0" encoding="ISO-8859-1"?>
<GelML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
		xsi:schemaLocation="http://www.psidev.info/gelml/GelML-v1_1.xsd"
		xmlns:fuge="http://fuge.sourceforge.net/fuge/1.0"
		xmlns="http://www.psidev.info/gelml/1.0"
		identifier="ExPASy:GelML:236">

<cvList>
<cv fullName="PSI sepCV" URI="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/sepcv/trunk/sep.obo" id="sepCV" version="1.0"/>
<cv fullName="Unit Ontology" URI="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/sepcv/trunk/unit.obo" id="UO" version="1.2"/>
</cvList>


 
		
<Gel2DExperiment id="ex100:Gel2DExperiment236"
	name="GIPRdn_4-7" date="2010-09-29">
	<electrophoresisType>
		<cvParam cvRef="sepCV" accession="sep:00180" name="Difference gel electrophoresis"/>
	</electrophoresisType>
	<ContactRole Contact_ref="ex100:Contact41">
        <role>
		<cvParam cvRef="sepCV" accession="sep:00035" name="principle investigator"/>
		</role>
	</ContactRole>








   



   

	
<Gel2DApplication Gel2DProtocol_ref="ex100:Gel2DProtocol236" id="ex100:Gel2DAppli236">


	
	
	<inputFirstDimension>
		


<Gel id="ex100:Gel1" name="Isoelectric focusing (IEF)" separationDimension="1">
	<gelType>IPG strip,Denaturing</gelType>
	
	<GelManufactureApplication>
		
		<make name="GE Healthcare Bio Sciences"/>
		<model name="Immobiline™ DryStrips, pH 4-7, 18 cm">
			<userParam name="Model number" value="17-1233-01"/>
		</model>
		<userParam name="Batch number" value="???"/>
		
	</GelManufactureApplication>
	<Dimensions>
		
		
		<x value="178" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
		<y value="3" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
		<z value="0.5" unitName="millimeter" unitAccession="UO:0000082" unitCvRef="UO"/>
	</Dimensions>
	
	<percentAcrylamide>
		<AtomicValue><PropertyValue value="7"/></AtomicValue>
	</percentAcrylamide>
	<AcrylamideToCrossLinker acrylamide="4" crossLinker="3">
		<crossLinkerType>
			<cvParam cvRef="sepCV" accession="sep:00190" name="Bisacrylamide"/>
		</crossLinkerType>
	</AcrylamideToCrossLinker>	
</Gel>

	</inputFirstDimension>
	
   
	
	
	
	<inputSecondDimension>
		


<Gel id="ex100:Gel2" name="Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE)" separationDimension="2">
	<gelType>slab gel,Denaturing</gelType>
	
	<GelManufactureApplication>
	
		<protocolText>
		Separation gel (12 % polyacrylamide) (2 gels)
26.8 ml ddH2O
20 ml 1.5 M TrisHCl pH 8.8 (Roth, Germany)
32 ml Acrylamide / bisacrylamide (37.5:1) (Serva, Germany)
800 μl SDS 10 % (Serva, Germany)
400 μl Ammonium persulfate 10 % (Merck, Germany)
40 μl N,N,N’,N’-Tetramethylethylendiamine (TEMED) (Roth, Germany)

Stacking gel (4 % polyacrylamide) (2 gels)
6.1 ml ddH2O
2.5 ml 0.5 M TrisHCl pH 6.8 (Roth, Germany)
1.3 ml Acrylamide / bisacrylamide (37.5:1) (Serva, Germany)
100 μl SDS 10 % (Serva, Germany)
50 μl Ammonium persulfate 10 % (Merck, Germany)
10 μl N,N,N’,N’-Tetramethylethylendiamine (TEMED) (Roth, Germany)
		</protocolText>
		
	</GelManufactureApplication>
	<Dimensions>
		
		
		<x value="18" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
		<y value="16" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
		<z value="0.1" unitName="centimeter" unitAccession="UO:0000015" unitCvRef="UO"/>
	</Dimensions>
	
	<percentAcrylamide>
		<AtomicValue><PropertyValue value="12"/></AtomicValue>
	</percentAcrylamide>
	<AcrylamideToCrossLinker acrylamide="37.5" crossLinker="1">
		<crossLinkerType>
			<cvParam cvRef="sepCV" accession="sep:00190" name="Bisacrylamide"/>
		</crossLinkerType>
	</AcrylamideToCrossLinker>	
</Gel>

	</inputSecondDimension>
	
   

<output>
<Gel2D id="ex100:Gel2D236">

    
	
	
    
	<PHRange dimension="1">
		<Range>
			<lowerLimit><PropertyValue value="100"/></lowerLimit>
			<upperLimit><PropertyValue value="10"/></upperLimit>
		</Range>
		<rangeType><cvParam cvRef="sepCV" accession="" name=""/></rangeType>
	</PHRange>
	

    
	
	
    
	
	<MolWeightRange dimension="2">
        <Range>
            <lowerLimit><PropertyValue value="" unitName="kilodaltons" unitCvRef="UO" unitAccession="UO:0000222"/></lowerLimit>
            <upperLimit><PropertyValue value="7" unitName="kilodaltons" unitCvRef="UO" unitAccession="UO:0000222"/></upperLimit>
        </Range>
		<rangeType><cvParam cvRef="sepCV" accession="sep:00019" name="logarithmic distribution"/></rangeType>
	</MolWeightRange>
	

</Gel2D>
</output>
<ChildProtocolApplications>
<!-- TO BE DONE -->

</ChildProtocolApplications>
</Gel2DApplication>

	

<ImageAcquisitionApplication Image_ref="ex100:Image93" Material_ref="ex100:Gel2D236" ImageAcquisitionProtocol_ref="ex100:ImageAcquisitionProtocol26" id="ex100:ImageAcquisitionApplication125">
	
	<protocolText>According to manufacturer</protocolText>
	
</ImageAcquisitionApplication>



	
</Gel2DExperiment>






	
		
		
	
<GelMLDataCollection>
<Image location="http://miapegeldb.expasy.org/download/316/XHD559y6/" id="ex100:Image93" name="GIPRdn_4-7" bitDepth="6-bit" dimensionX="1415" dimensionY="1400">
<resolution>
<AtomicValue>
    
        
    
	<PropertyValue value="300" unitAccession="UO:0000240" unitName="dots per inch" unitCvRef="UO"/>
</AtomicValue>
</resolution>
<fileFormat>
	
		
	
	<cvParam cvRef="sepCV" accession="sep:00053" name="TIFF"/>
</fileFormat>
<userParam name="Standard image orientation" value="Yes"/>
</Image>
</GelMLDataCollection>




















<GelMLProtocolCollection>

    <ElectrophoresisProtocol
name="FirstDimension"
id="ex100:ElectrophoresisProtocol266" >
<protocolText>[Protocol text in here]</protocolText>
<AddBufferAction id="ex100:AddBufferAction" SubstanceMixtureProtocol_ref="ex100:SubstanceMixtureProtocol0"/>
</ElectrophoresisProtocol>

    <ElectrophoresisProtocol
name="SecondDimension"
id="ex100:ElectrophoresisProtocol267" >
<protocolText>[Protocol text in here]</protocolText>
<AddBufferAction id="ex100:AddBufferAction" SubstanceMixtureProtocol_ref="ex100:SubstanceMixtureProtocol0"/>
</ElectrophoresisProtocol>

    
<ImageAcquisitionProtocol id="ex100:ImageAcquisitionProtocol26">
	<equipment id="ex100:GenericEquipment40" name="Typhoon">
		<userParam name="type of equipment" value="laser scanner" cvRef="sepCV" accession="sep:00100" />
		<userParam name="make" value="GE Healthcare Bio Sciences"/>
		
		<userParam name="version" value="63-0055-78"/>
		
	</equipment>
	<software id="ex100:GenericSoftware104" name="Typhoon" version="63-0055-78"/>
	<AutoCalibration id="ex100:AutoCalib0">
		<BooleanValue value="false"/>
	</AutoCalibration>
	
	
</ImageAcquisitionProtocol>


</GelMLProtocolCollection>

<AuditCollection>

	<Person
id="ex100:Contact41"
name="Andreas Blutke"
email="blutke@patho.vetmed.uni-muenchen.de"
address="Institute of Veterinary Pathology 
Ludwig-Maximilians-Universitaet München 
Veterinärstr.13
80539 München 
Germany. ">
<affiliations
Organization_ref="ex100:Organization33"/>
</Person>

	<affiliations
Organization_ref="ex100:Organization33"
name="University of Munich"/>

</AuditCollection>
</GelML>



