Description
The HUPO Proteomics Standards Initiative (PSI) defines standards for data representation in proteomics, to facilitate data exchange and comparison between experiments, and further promote quality assessment. In particular, the MIAPE documents specifies the minimum information to report when describing or publishing a proteomics experiment.
MIAPEGelDB is intended to help end-users to write such MIAPE documents, through a self-documenting web interface. The documents produced are stored in a database, and thus remain easily accessible by anybody through a stable URL unique for each documents.
Warning: MIAPEGelDB will not prevent to enter documents not fully MIAPE-compliant. However it should speed up consistent submission, through a sequential workflow limiting missing elements.
This project has been published in Journal of Proteomics 2008 71(2).
Coverage
Currently, MIAPE Gel Electrophoresis document is implemented (version 1.4, published in Nature Biotechnology (2008) 26: 863-864).
The database currently contains 40 published gels in 8 published experiments.
Usage
Browse the database
- Search a document or experiment in the database.
- 10 latest published experiments:
- Test experiment (1 gels)
- Cytoplasmic proteome reference map from cells of Corynebacterium glutamicum ATCC1406 (2 gels)
- SWISS-2DPAGE reference map (analytical gel) (31 gels)
- Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome (3 gels)
- Apis mellifera workerbee hemolymph proteins (1 gels)
- Reference map of multiple myeloma cells (1 gels)
- Pseudomonas putida UW4 proteome reference map (1 gels)
- experimento de prueba (0 gels)
Create experiment
Each document is part of an experiment. To create a document, you have to create an experiment first.
To create an experiment, you have to be registered and logged-in. Once you are done, the links will appear below.